PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA029658-PA
Common NameOsI_31587
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 227aa    MW: 24507.7 Da    PI: 8.9359
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA029658-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.7e-082780554
                      HHHHHHHHHHHHHHHHHHHHCTSCC.C......TTS-STCHHHHHHHHHHHHHH CS
               HLH  5 hnerErrRRdriNsafeeLrellPk.as...kapskKlsKaeiLekAveYIksL 54
                       +e+ErrRR++++    +L +l+P+  +   k ++   +    L +A  YIk+L
  BGIOSGA029658-PA 27 RKEMERRRRQDMKGLCVKLASLIPNeHCsksKMQGATGTQLGSLDEAAAYIKKL 80
                      579**********************66599888888899999**********99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.1052280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-112693IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-62886IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-52880IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-92897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDQEKADGGG RRRRSSGSGA SSTAAERKEM ERRRRQDMKG LCVKLASLIP NEHCSKSKMQ  60
GATGTQLGSL DEAAAYIKKL KERVDELHHK RSMMSITSSR CRSGGGVPAA AAGQSTSGGG  120
GEEEEDMTRT TAAAAVVEVR QHVQEGSLIS LDVVLICSAA RPVKFHDVIT VLEEEGADII  180
SANFSLAAHN FYYTIYSRAF SSRIGIEASR ISERLRALAM TTEVIRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.103000.0stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647775.11e-108PREDICTED: uncharacterized protein LOC4326162 isoform X1
TrEMBLA2Z1V31e-165A2Z1V3_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA029658-PA1e-164(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.16e-14bHLH family protein